PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538810.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 81aa MW: 8272.58 Da PI: 10.0297

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538810.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	37.3	6.5e-12	39	61	3	25
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGC 25 +++Y+eClkNhAaslGgha+DG KN538810.1_FGP002 39 ETVYRECLKNHAASLGGHALDGS 61 578*******************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-7	6	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.3E-8	40	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	13.87	42	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MEAMDVKYKP LVFPNGAIKK AAKPAAVAPA VGGGGGGGET VYRECLKNHA ASLGGHALDG 60 SLIQEINPKK GRRGCRSVLD A

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538810.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069500	4e-82	AK069500.1 Oryza sativa Japonica Group cDNA clone:J023022H01, full insert sequence.
GenBank	AP005636	4e-82	AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBank	AP014965	4e-82	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	4e-82	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001145929.2	2e-16	uncharacterized protein LOC100279452
Swissprot	Q6ER21	3e-17	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	J3MXF2	3e-17	J3MXF2_ORYBR; Uncharacterized protein
STRING	OB09G16810.1	4e-18	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	3e-07	homeobox protein 23