PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538810.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 79aa    MW: 8903.25 Da    PI: 9.5934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538810.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-171466148
                       TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd+ lv +++++G g      t ++Ia++++  Rt++++k++w+++l
  KN538810.1_FGP011 14 KGPWTPEEDLMLVSYIQEHGAGnwravpTNTAIASYLP-ERTDNDIKNYWNTHL 66
                       79********************5555555567788888.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-25574IPR009057Homeodomain-like
SuperFamilySSF466896.39E-18873IPR009057Homeodomain-like
PROSITE profilePS5129421.744970IPR017930Myb domain
SMARTSM007171.6E-131368IPR001005SANT/Myb domain
PfamPF002491.4E-151466IPR001005SANT/Myb domain
CDDcd001675.15E-151666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDLMLVSYIQ EHGAGNWRAV PTNTAIASYL PERTDNDIKN  60
YWNTHLKKKL KKMQAAGGF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538810.1_FGP011
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741379e-68AF474137.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0056369e-68AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149659e-68AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126179e-68CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610978.12e-42myb-related protein 306
SwissprotB3VTV72e-38MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A0A0LQ552e-45A0A0A0LQ55_CUCSA; Uncharacterized protein
STRINGORUFI09G10920.18e-42(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.12e-40myb domain protein 96
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]