PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538813.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 140aa    MW: 15640.6 Da    PI: 4.8053
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538813.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB55.11.9e-177102695
              NF-YB   6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                        ++lP a v r++k+ l + a       + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r
  KN538813.1_FGP009   7 EELPKAIVRRLVKEKLAQVAAdgadviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFR 98 
                        689**********99876543222333899************************************************************** PP

              NF-YB  92 eleg 95 
                        + ++
  KN538813.1_FGP009  99 NKNA 102
                        9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-337135IPR009072Histone-fold
PfamPF008084.9E-11878IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.0E-279133IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAEAEVEELP KAIVRRLVKE KLAQVAADGA DVIVNKDAMS AFAESARIFI HYLSATANDM  60
CKESKRQTIN ADDVLKALDE MEFPEFVEPL NTSLQEFRNK NAARRSGTTQ KKAEKKRKLD  120
KESLPQEQND AADNGKADED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116RRSGTTQKKAEKKR
2109117QKKAEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538813.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426340.0AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661566.13e-88PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLA0A0P0XQL19e-91A0A0P0XQL1_ORYSJ; Os09g0568200 protein
STRINGOS09T0568200-011e-91(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-38nuclear factor Y, subunit B11