PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538816.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 250aa MW: 26423.2 Da PI: 7.9266

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538816.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	8.1e-13	83	127	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + +lG+g+W+ I+r ++Rt+ q+ s+ qk+ KN538816.1_FGP009 83 PWSEEEHRLFLVGLDKLGKGDWRGISRSYVTTRTPTQVASHAQKF 127 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.532	3	18	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	8.1E-4	3	28	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	17.374	76	132	IPR017930	Myb domain
SuperFamily	SSF46689	7.26E-17	77	133	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-17	79	131	IPR006447	Myb domain, plants
SMART	SM00717	6.0E-9	80	130	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-9	80	123	IPR009057	Homeodomain-like
CDD	cd00167	9.28E-9	83	128	No hit	No description
Pfam	PF00249	4.1E-10	83	126	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MARKCSHCGN YGHNSRTCSS SSSASAGHRD TTMLCDGGGG GDGGGGSGLR LFGVQGGLER 60 ASNGYLSDGP HGRIVQERKK GVPWSEEEHR LFLVGLDKLG KGDWRGISRS YVTTRTPTQV 120 ASHAQKFFLR QSSIGKKKRR SSLFDMVPIC ENGARVSEQL SGEGAAAAAA ASTSLSLMNT 180 HESSSDRVAA IDLNSTEEDD TVGASGRPFF PVVLMEQQQQ ASHGHGHHHH CTPLDLELGM 240 SVSSTPSIGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	139	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538816.1_FGP009

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061500	0.0	AK061500.1 Oryza sativa Japonica Group cDNA clone:006-309-D10, full insert sequence.
GenBank	AK103432	0.0	AK103432.1 Oryza sativa Japonica Group cDNA clone:J033128P13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648805.1	1e-126	transcription factor KUA1
Swissprot	Q7XC57	1e-44	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	Q5ZBC6	1e-139	Q5ZBC6_ORYSJ; Os01g0603300 protein
STRING	ORGLA01G0174500.1	1e-126	(Oryza glaberrima)
STRING	OBART01G21920.1	1e-126	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4932	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	3e-43	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]