PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538818.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 324aa MW: 35964.4 Da PI: 4.7536

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538818.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	67	105	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+ErrRR r+N ++ Lr + sK ++L A+e+Ik+Lq KN538818.1_FGP009 67 NLEAERRRRGRLNGNIFALRAM------------SKEATLSDAIEHIKNLQ 105 5689***************975............67779999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-10	61	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-4	64	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0084	68	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF03224	3.5E-28	216	323	No hit	No description
Gene3D	G3DSA:1.25.10.10	8.3E-32	220	323	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	4.83E-24	220	323	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MPRRARARGS GGGGGGEEVK VEDDFVDSVL NFGGGGGGEE DGDDGEEEQQ QQAAAAAAMG 60 KEFKSKNLEA ERRRRGRLNG NIFALRAMSK EATLSDAIEH IKNLQNEVLE LQRQLGDSPG 120 EAWEKQGSAS CSESFVPTEN AHYQGQVELI SLGSCKYNLK IFWTKRAGLF TKVLEALCSY 180 KVQVLSLNTI SFYGYAESFF TIEVKGGLFG HPVMDHAELT TEQVLKRDIP WESYMANKLI 240 SGTCLQLLRR YDHKPESQRG PLLDEDGPSY VRVFLNILRN ISKEDTVEYV LALIDEMLAV 300 NPKRAALFYD NSLSGEDIYD PFLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538818.1_FGP009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067714	0.0	AK067714.1 Oryza sativa Japonica Group cDNA clone:J013120K21, full insert sequence.
GenBank	CT829548	0.0	CT829548.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104E14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657813.1	1e-110	PREDICTED: transcription factor ABORTED MICROSPORES-like
Swissprot	B9FXT3	1e-103	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	A0A0E0AL60	1e-113	A0A0E0AL60_9ORYZ; Uncharacterized protein
TrEMBL	A0A1W0W6X5	1e-110	A0A1W0W6X5_SORBI; Uncharacterized protein (Fragment)
STRING	OGLUM07G17700.1	1e-114	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-14	bHLH family protein

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]