PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538831.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 196aa    MW: 21238.1 Da    PI: 8.6408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538831.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-07151854
                       HHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
                HLH  8 rErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54
                       +ErrRR++++    +L +l+P+  +   k ++   +    L +A  YIk+L
  KN538831.1_FGP016  1 MERRRRQDMKGLCVKLASLIPNeHCsksKMQGATRTQLGSLDEAAAYIKKL 51
                       6*********************66699888888899*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-10165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0031157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.194151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-4155No hitNo description
SuperFamilySSF474594.45E-9168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MERRRRQDMK GLCVKLASLI PNEHCSKSKM QGATRTQLGS LDEAAAYIKK LKERVDELHH  60
KRSMMSITSS RCRSGGGGGP AAAAAGQSTS GGGGEEEEED MTRTTAAAAV VEVRQHVQEG  120
SLIGLDVVLI CSAARPVKFH DVITVLEEEG ADIISANFSL AAHNFYYTIY SRAFSSRIGI  180
EASRISERLR ALVIRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538831.1_FGP016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028450.0AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647782.11e-111transcription factor bHLH167 isoform X2
TrEMBLA0A0D3EIR11e-112A0A0D3EIR1_9ORYZ; Uncharacterized protein
STRINGOBART01G00600.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.17e-12bHLH family protein