PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538831.1_FGP018
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 593aa    MW: 63599.8 Da    PI: 10.2003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538831.1_FGP018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00067582255
                       HHHCTSCCC.....................TTS-STCHHHHHHHHHHHHHHH CS
                HLH 22 eLrellPkas..................kapskKlsKaeiLekAveYIksLq 55
                       +L +llP a                   + +++ ++  + Le+A  YIk+L+
  KN538831.1_FGP018  7 KLSSLLPAAAaprrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 58
                       7889999955599999999999999965556666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.6E-4371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF060751.3E-34119345IPR010341Protein of unknown function DUF936, plant
PfamPF060757.7E-13257429IPR010341Protein of unknown function DUF936, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MKGLCLKLSS LLPAAAAPRR HHHHYSTSSS SSPPSSTKEA VTQLDHLEQA AAYIKQLKGR  60
IDELKKRKQQ AAALTTNTSN GSGNGGGGGM PVVEWVDRAE ERRGEEEFGR AEPQIPEKVT  120
DIVPADLDDK DLLPRHGKFY VKVSDSSHSI YATLPLAQAD LVLSNKLQLG QFVHLDDLDP  180
GSPVPVIVGA RPLPGRHPLV VGTPDPATRA KPAAPRRGSW GPENHAGILA SPRVIKPTTL  240
NFEDRTPVKE RPPAPSPARS TASSLRKSSS VLPRITRSKS FVADRAPDHP KIPKSPFPTE  300
KSSMSCYTAS RAMSRRATPK EEEPSSPSSD DELCSSATSS KKRPSTSTRV PEAMEQREQA  360
QKAALEALRN ASATDNVVRI YKMFAELSKT ARPDAPATCF ESFLIFHQEA VQAVTDIEAI  420
QAATSMAGAE IAQNRSSLSK RRGALGVSKS VSFAPGTLDD GGGKNRSSNA SRKCLVLDKI  480
GEDGDEKRSS SGSSATGALG SSLRLAKQMQ CEASSWFMDF VEAAVETGLK KKSKASATAD  540
GRKQSSCCCP QSLILRVINW VEMEQSGDGS SRKPSHPRAA AIARKLRIKA KNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538831.1_FGP018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021030.0AK102103.1 Oryza sativa Japonica Group cDNA clone:J033084B06, full insert sequence.
GenBankAP0028450.0AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632365.10.0uncharacterized protein LOC9268327
TrEMBLA2ZNE40.0A2ZNE4_ORYSJ; Uncharacterized protein
TrEMBLB8ACV00.0B8ACV0_ORYSI; Uncharacterized protein
STRINGOMERI01G00100.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP825322