PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538833.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 323aa    MW: 34912.6 Da    PI: 4.4237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538833.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.28e-2091541128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk..... 79 
                        l pG+ FhP+d+ l+  +L+ ++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra++     
  KN538833.1_FGP001   9 LEPGYVFHPSDDGLIILFLRLSIAKLPFED-RLINRADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVAggggg 99 
                        579************************998.88**************7335666655557779*****976544411555666754435544 PP

                NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                        +++Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  KN538833.1_FGP001 100 ESVWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 154
                        678********************99999966677766889999999*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-317173IPR003441NAC domain
PROSITE profilePS5100528.4739173IPR003441NAC domain
PfamPF023656.2E-1111153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLIILFLRLS IAKLPFEDRL INRADVYSAD PAELVGEHRP  60
APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVAGGGGGE SVWKSEGGKK AVIGADGRRV  120
GYLQKFSYGV YESSSSGSAR TFTRLGWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE  180
ARTAAAKSAD SPCSGSKRKA DDGADHPEAP PSARPRQEEA GSEHGEQPEI LPEFDQLDAM  240
LSAPMDGNLG VEFDTATTEQ YMRYLMNDEP LPWAPTMETV DGVAGGGDEF IETTNGPRMG  300
EEEIIARLAA GETLDDILST NPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-14617214164NO APICAL MERISTEM PROTEIN
1ut4_B7e-14617214164NO APICAL MERISTEM PROTEIN
1ut7_A7e-14617214164NO APICAL MERISTEM PROTEIN
1ut7_B7e-14617214164NO APICAL MERISTEM PROTEIN
3swm_A7e-14617317168NAC domain-containing protein 19
3swm_B7e-14617317168NAC domain-containing protein 19
3swm_C7e-14617317168NAC domain-containing protein 19
3swm_D7e-14617317168NAC domain-containing protein 19
3swp_A7e-14617317168NAC domain-containing protein 19
3swp_B7e-14617317168NAC domain-containing protein 19
3swp_C7e-14617317168NAC domain-containing protein 19
3swp_D7e-14617317168NAC domain-containing protein 19
4dul_A7e-14617214164NAC domain-containing protein 19
4dul_B7e-14617214164NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538833.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.10.0NAC domain-containing protein 71-like
RefseqXP_015629670.10.0NAC domain-containing protein 71-like
TrEMBLA0A0E0D9190.0A0A0E0D919_9ORYZ; Uncharacterized protein
STRINGOMERI03G36030.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-10NAC family protein