PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538833.1_FGP021
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 71aa    MW: 7705.61 Da    PI: 4.2095
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538833.1_FGP021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.97.7e-10955148
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                       l pG+ FhP+d+ l+  +L++++++ ++e  + i+++d+y+++P +L 
  KN538833.1_FGP021  9 LEPGYVFHPSDDGLIILFLRPSIAKLPFED-RLINRADVYSADPAELV 55
                       579************************999.89*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-13758IPR003441NAC domain
PROSITE profilePS5100513.907971IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLIILFLRPS IAKLPFEDRL INRADVYSAD PAELVGEHRP  60
APGTHGSSSV C
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538833.1_FGP021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-105CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.12e-39NAC domain-containing protein 71-like
RefseqXP_015629670.12e-39NAC domain-containing protein 71-like
TrEMBLA0A0E0P3E72e-40A0A0E0P3E7_ORYRU; Uncharacterized protein
TrEMBLA0A0E0P3F52e-40A0A0E0P3F5_ORYRU; Uncharacterized protein
STRINGORUFI03G41360.13e-41(Oryza rufipogon)
STRINGORUFI03G41410.14e-41(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.15e-09NAC domain containing protein 41