PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538834.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 1035aa    MW: 114608 Da    PI: 7.7859
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538834.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.51.8e-24214263151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ
  KN538834.1_FGP003 214 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQ 263
                        79*******************.***************************** PP
2Response_reg75.71.8e-25261341109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ +++l+++l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +
  KN538834.1_FGP003  26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGI 115
                        799********************.***************99999********************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel++
  KN538834.1_FGP003 116 THGACDYLLKPVRIEELRN 134
                        *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.0E-4023156No hitNo description
SuperFamilySSF521725.27E-3423150IPR011006CheY-like superfamily
SMARTSM004483.6E-3024136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2226135IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.75E-2627140No hitNo description
PROSITE profilePS5129410.879211270IPR017930Myb domain
SuperFamilySSF466891.79E-15212265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-24212263IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-22214263IPR006447Myb domain, plants
PROSITE profilePS513755.722667701IPR002885Pentatricopeptide repeat
PfamPF138121.0E-5692748IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.761702736IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.925737771IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.5E-6776838IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.5E-6875972IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.643878912IPR002885Pentatricopeptide repeat
PfamPF015355.0E-4883909IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-4883913IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.029913943IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MRAAEERKGV VPAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL  60
KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC  120
DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NLDFYEECNK PPNADSDHVH GHVTCGSPDQ  180
SGRPSKKRKE YCSEEEDEGE VSTQDIDDPS APKKPRVVWS VELHRKFVAA VNQLGIDKAV  240
PKRILELMNV EKLTRENVAS HLQARNSFHY LLFISMYCPR NNPAALGTQG VPASKSIQTM  300
SGSHTLSHSI NDANKYHLSL PGNQKGNLGQ GLATSLGQTQ MQQKWIHEET DDLSTILSGN  360
GLSNGMSGTL QSVTSSPLLP QELAQCTQAK IVSQPSIRTS SVSSEHLEGA VGVSSGLLDS  420
RVSQQSTIPL SGFSANGLLI HGSFNNTCAN KLGGTSSSCT PARSSNDLMV ARDTKGGASS  480
FGGAMLLPPD TEQKYLNFGG GNGLKQKFDD RTADSLFDPK FVWSSVPSSQ LASNIGAHHA  540
MSQRWNNSSS NSSNIGARMI GQATSSGSTV IPQMKTDFLV SSGDMLMPKN ASDLSIPKLQ  600
SELSSSSCSF DGLLNSIVKV ILSWMDSHND FRLSPSDHMV RLELIAKVHG TSQAEEYYRK  660
LSTAASKKAA SFPLLHCYVT ERNVQKAETF MAELQRYGLP VDPHSFNEIM KLYVATCQYE  720
KVFSVIYLMK RNNIPRNVLS YNILMNACAE VSGLASVQSA FKEMLNDDMV EVGWSTYCTL  780
ANIFKKYGQS SKALSCLRTA ETKLSSTGRL GYSFIMTCYA ALNDRDGVIR LWEASKIVPG  840
RIPAANYMSA MLCLIKVGDI GRAEWTFGSW EAESKKHDVR VSNVLLGAYV RNGWIEKAER  900
LHLHMLEKGA HPNYKTWEIL MEGFVQSKQM DKAVNAMKKG LSLLKTCHWR PPLELLEAIA  960
KYFEEQGSVE DADRFIKVLQ KFNLTSLPLY KSLLRAYINA DIVPQNIPQM IAGDQIDMDE  1020
EMDQLIIRAS KIDIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20210263154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538834.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A0E0CSK10.0A0A0E0CSK1_9ORYZ; Uncharacterized protein
STRINGOMERI02G33110.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-93response regulator 12