PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538834.1_FGP009

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 242aa MW: 24479.3 Da PI: 5.639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538834.1_FGP009	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	61	100	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq KN538834.1_FGP009 61 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 100 6****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.668	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-8	60	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-13	60	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	61	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.04E-10	62	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MQPNARQMHG GGGRGGGGQD DFFDQMLSTL PAGGDHALYN GFGAAGMHGA AAMQPPPFGQ 60 LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGASAVAPL 120 VANMSSESNG NGNATSSSGN GEAANGSSNS DNNGGGTLRV TEQQVAKLME EDMGSAMQYL 180 QGKGLCLMPI SLATAISSAT SSLLLPRTGG GAGGSLHEGG NGTSPPLVNG AATGGDDAGG 240 KQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	17	GGRGGGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538834.1_FGP009

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003975	1e-173	AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBank	AP004094	1e-173	AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBank	AP014958	1e-173	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	1e-110	transcription factor bHLH66
Swissprot	Q9LSQ3	3e-62	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A0D3FBK6	1e-118	A0A0D3FBK6_9ORYZ; Uncharacterized protein
STRING	OBART02G35840.1	1e-119	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-47	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]