PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538838.1_FGP049

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 242aa MW: 24935.2 Da PI: 8.0165

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538838.1_FGP049	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	231.6	1.4e-71	13	171	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 g+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + +ass+ a+++a+aask++r l ++q+++s+t++s+a+ KN538838.1_FGP049 13 GAATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGSASSSPATASAAAASKKPRLL--TSQTTTSHTSTSNAT 102 6789*******************************************************************87..88999999*** PP DUF702 96 skkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++t+s lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++ KN538838.1_FGP049 103 TPRSFDTTSshqdasfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 171 **99999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.3E-64	14	170	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.5E-27	16	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.2E-29	122	169	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MLDTGGGSSG SGGAATCQDC GNQAKKDCGH QRCRTCCKSR GFDCSTHVKS TWVPAARRRE 60 RQQLTGSASS SPATASAAAA SKKPRLLTSQ TTTSHTSTSN ATTPRSFDTT SSHQDASFRE 120 SLPRQVRAPA VFRCVRVTSI DDGEDEYAYQ ATVTINGHVF KGFLYDQGVD DGRGLAATSN 180 DDSTAGGVPN ISELHLGGAS ISGNAMREGG SSMVHSDLYG GGGGSGGGPH ILGGSSYVNT 240 MN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538838.1_FGP049

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102444	0.0	AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622050.1	1e-175	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	7e-68	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	Q941Y5	1e-174	Q941Y5_ORYSJ; Os01g0954500 protein
STRING	OS01T0954500-01	1e-175	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-62	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]