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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KN538840.1_FGP012 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 106aa MW: 11723.6 Da PI: 10.6309 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 78.9 | 3.6e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rien+ rqvtfskRr g+lKKA+E+ vLCd++va i+fs +g+l+ y+s
KN538840.1_FGP012 10 RIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYAS 59
8**********************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.3E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 29.072 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.1E-27 | 2 | 70 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.25E-35 | 2 | 65 | No hit | No description |
| PRINTS | PR00404 | 3.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 106 aa Download sequence Send to blast |
MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS 60 HTTNLTGALD GATFLRHYYC RWGNTTSTIM GYLLASKTIS FVGGMK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5f28_A | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_B | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_C | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_D | 1e-19 | 1 | 60 | 1 | 60 | MEF2C |
| 6byy_A | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6byy_B | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6byy_C | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6byy_D | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_A | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_B | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_C | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_D | 1e-19 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KN538840.1_FGP012 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AL731752 | 1e-100 | AL731752.4 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
| GenBank | AP014968 | 1e-100 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
| GenBank | CP012620 | 1e-100 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015619865.2 | 3e-38 | MADS-box transcription factor 20 | ||||
| Swissprot | Q2QQA3 | 3e-39 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
| TrEMBL | A0A0E0FCB9 | 1e-37 | A0A0E0FCB9_9ORYZ; Uncharacterized protein | ||||
| TrEMBL | B9GDA2 | 1e-39 | B9GDA2_ORYSJ; Uncharacterized protein | ||||
| STRING | OMERI12G08810.1 | 3e-38 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP129 | 38 | 398 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60910.1 | 6e-28 | AGAMOUS-like 8 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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