PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538841.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 222aa    MW: 24693.9 Da    PI: 4.672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538841.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.8e-0881993856
                       TS-HHHHHHHHHHHHHHHH CS
           Homeobox 38 gLterqVkvWFqNrRakek 56
                       +Lt +qV vWFqNrRa++k
  KN538841.1_FGP010 81 RLTPEQVAVWFQNRRARWK 99
                       69****************9 PP
2HD-ZIP_I/II73.25.1e-24791343590
        HD-ZIP_I/II  35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        + +l+p qvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L+++
  KN538841.1_FGP010  79 KRRLTPEQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQ 134
                        55799************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-1048103IPR009057Homeodomain-like
SMARTSM003890.002251105IPR001356Homeobox domain
PROSITE profilePS5007110.30173101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-879108IPR009057Homeodomain-like
PfamPF000461.0E-58199IPR001356Homeobox domain
CDDcd000863.47E-782102No hitNo description
PfamPF021837.1E-14101134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MESGRLIFST AGSGAGQMLF LDCGAGGGGG VGGGAMFHRG TRPVLGMEEG GRGVKRPFFS  60
TPDELLEEEY YDEQLPEKKR RLTPEQVAVW FQNRRARWKT KQLERDFDRL KASFDALRAD  120
HDALLQDNHR LHSQHLAAVD SSVESYFPGG DEYHDCVMGP MDHAAGGIQS EEDDGAGSDE  180
GCSYYADDAG VLFADHGHHH HHQHADDDEE DGQQISCWWM WN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538841.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0583641e-149AK058364.1 Oryza sativa Japonica Group cDNA clone:001-014-F09, full insert sequence.
GenBankAK1195921e-149AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence.
GenBankAP0048881e-149AP004888.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0617A09.
GenBankAP0057511e-149AP005751.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09.
GenBankAP0149581e-149AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCT8306271e-149CT830627.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence.
GenBankCT8331531e-149CT833153.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226L23, full insert sequence.
GenBankCT8346991e-149CT834699.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI215L09, full insert sequence.
GenBankCT8347001e-149CT834700.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224F24, full insert sequence.
GenBankCU4056731e-149CU405673.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C006O03, full insert sequence.
GenBankCU4059601e-149CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572981.12e-63homeobox-leucine zipper protein HOX16
SwissprotQ6YWR48e-63HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A0D3FA173e-84A0A0D3FA17_9ORYZ; Uncharacterized protein
TrEMBLA0A287UN354e-84A0A287UN35_HORVV; Uncharacterized protein
STRINGOBART02G31160.15e-85(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-28homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]