PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538842.1_FGP025
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 129aa    MW: 13897.8 Da    PI: 8.5054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538842.1_FGP025genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.3e-0522502154
                       HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         L++l+ +      +K + a++L +++eYIk L
  KN538842.1_FGP025 22 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 50
                       5666666665.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.194150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-111271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-81372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-51354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MVIDFLPIKF HVRKEKLGDR VTALQQLVSP FGKTDTASVL HETIEYIKFL HDQVGALSAP  60
YLKNRQQVPH LKNSAGVDND GGGGGGEATA ASKRDLTGRG LCLVPISSTF AVASETPVDF  120
WTPFGAAFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538842.1_FGP025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045905e-86AP004590.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577G06.
GenBankAP0149645e-86AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.19e-75transcription factor bHLH112 isoform X2
SwissprotQ8GXT37e-37BH123_ARATH; Transcription factor bHLH123
TrEMBLA3BQ812e-86A3BQ81_ORYSJ; Os08g0179400 protein
STRINGOGLUM08G05080.17e-81(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]