PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538845.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 578aa    MW: 63000.4 Da    PI: 5.9285
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538845.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-1685136155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  KN538845.1_FGP012  85 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 136
                        89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-1885146IPR016177DNA-binding domain
CDDcd000181.03E-2485146No hitNo description
PfamPF008471.4E-1085136IPR001471AP2/ERF domain
SMARTSM003804.3E-3486150IPR001471AP2/ERF domain
PROSITE profilePS5103219.40186144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1886145IPR001471AP2/ERF domain
CDDcd003776.70E-94151393No hitNo description
SuperFamilySSF516214.49E-87156434IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain
PfamPF137144.8E-50157394No hitNo description
Gene3DG3DSA:3.20.20.602.4E-80158430IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAGEDAPYGV MDAFNRGTHE TQGIDGQEDM KLICGIIAVG EKDKVARGDR MSNYEKELEE  60
MKHMTRQEYI AHLRRNSSGF SRGASKYRGV TRHHQHGRWQ ARIGRVAGNK DIYLGTFSTE  120
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSILDSSTLP APACYDALSA RLVGRAGFKV  180
CFTSGFSISA ARLGLPDVGL ISYGEMIDQG RLITEAASIP VIGDADNGYG NCMNVKRTVK  240
GFIKAGFAGI ILEDQVSPKA CGHTQGRKVV SREEAIMHIK AAVDARKESG SDIVIVARTD  300
SRQALSLDEA LWRVRAFADA GADVLFIDAL ASREEMKAFC AVSPGVPKMA NMLEGGGKTP  360
ILSPAELEET GYKLIAYPLS LIGVSMRAME DALIAIKGGR IPPPSSLPSF EEIKDTLGFN  420
SYYEEEKRYV VTPAQSSSYR SGYYDNTSEA SSPGDAKSRT ETPQEPVIDI LPQLYDLGST  480
GGRGPSAGMW SRTLRLRITG RDGVQKIDAR IPVAFVYPHY LQQAGFLEGM TKVIPGLAGA  540
NIMERLRNAP IDSENPQNGQ ILLDFEDAMG DRIQVFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1zlp_A3e-5116242944310petal death protein
1zlp_B3e-5116242944310petal death protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538845.1_FGP012
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414430.0AK241443.1 Oryza sativa Japonica Group cDNA, clone: J065162K24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635555.10.0uncharacterized protein LOC4336329
TrEMBLA0A0D3FXP00.0A0A0D3FXP0_9ORYZ; Uncharacterized protein
STRINGOBART04G17950.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.12e-55AP2 family protein