PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538860.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 123aa    MW: 14155.6 Da    PI: 9.6317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538860.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13143855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI+ Lq
  KN538860.1_FGP008  1 MERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQRLQ 43
                       6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-16154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-11147No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-14148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.094142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-11143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MERDRRRKLN EKLYALRSVV PNITKMDKAS IIKDAIEYIQ RLQAEEQQML RDKRRDAMAR  60
VCRALEELRL RVITANITSV AGCLMHTLFV EVDHMDSVQM KQMVEAALSQ LVATGSPLSS  120
MSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538860.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422101e-115AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151185.21e-46DNA binding like
SwissprotQ2HIV96e-19BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0D3FTY62e-69A0A0D3FTY6_9ORYZ; Uncharacterized protein
STRINGOBART04G06880.14e-70(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.22e-22bHLH family protein