PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538861.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 576aa    MW: 65591.3 Da    PI: 9.0971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538861.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-18511301398
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        + ++++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F+++++s+f   v +++
  KN538861.1_FGP003  51 KFQVIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFRHIENSRF--AVLILD 130
                        56899*********999..888****************..*********************************99999..777776 PP
2B3469.4e-15263361399
                        EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
                 B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                        +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv++n++kegD+++F+l+  + ++f
  KN538861.1_FGP003 263 TTMKHSNVNSHhASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRQNHVKEGDICIFHLKnFTgRKF 352
                        678888888886789*******8887..557789999985778*******77888888*************************986556888 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                        + +v+++r+
  KN538861.1_FGP003 353 RATVHLLRE 361
                        888888775 PP
3B356.64.8e-18479572899
                        -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
                 B3   8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93 
                        s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  KN538861.1_FGP003 479 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMT 566
                        55555522345899*****993.33344.5555554999*******..777776689***********************996634555677 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v+++r+
  KN538861.1_FGP003 567 VHIIRH 572
                        777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-2038134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.32339132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1941134IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-842132IPR003340B3 DNA binding domain
CDDcd100172.14E-1649130No hitNo description
PfamPF023625.2E-1651130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-18252347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19256355IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-19259360No hitNo description
SMARTSM010197.7E-4261362IPR003340B3 DNA binding domain
PROSITE profilePS5086311.406262362IPR003340B3 DNA binding domain
PfamPF023624.7E-14262361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-22464573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-20465573IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-14470571No hitNo description
PROSITE profilePS5086312.844472573IPR003340B3 DNA binding domain
SMARTSM010191.0E-10472573IPR003340B3 DNA binding domain
PfamPF023622.1E-16476572IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MAGQGSQMKK YCDCCKRYVD HSNGKMKCFH RQMSANFEHS MFIAYLMNLI KFQVIIPNKF  60
LDQFGGKISR TVELESPKGN VYVVKVSKHM NKTVLQCGWE AFVDAHQIEE NDSLLFRHIE  120
NSRFAVLILD SDGCEKVFSC SGKRRASGVQ ERNADPIDVS SSTHDDTAQS SGGERFARSE  180
SGSDSQHSKT VKLAATCSSG GSGEEAKECS SSEHESSYDL VDPQIAPMPG YVLSRGTNLS  240
EAHEEKLDML VQEIRPEIPL YVTTMKHSNV NSHHASLVIA KHYACAYFPR TSQTITLKWH  300
GKNRKWHPKF YIRKDQVGYI LHGRWIDFVR QNHVKEGDIC IFHLKNFTGR KFRATVHLLR  360
ETIPHSFGAL HIPKRFESRN GRMRLKMTDD RRVSSTECRR GTMEPSTTNV KKEADNEQCN  420
NGQGKRQEPL NFDVSVGSSK PYLTADRVSL TEEQFRKVEE NVHSIQSEGP IYVSIMNKSN  480
VGTDGLYIIT LGRQFATRYL PEGEQTLTLL TTGTGKAWQV KMRPRSGDAR MFTLGWRDFV  540
RDNRLQTEDI CLFQLMKNSE RGLAMTVHII RHNERS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538861.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLI1PDJ50.0I1PDJ5_ORYGL; Uncharacterized protein
STRINGORGLA03G0244100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]