PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538861.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 80aa    MW: 8742.82 Da    PI: 9.4667
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538861.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof67.91.6e-213064438
             zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrr 38
                       +  +cprC s++tkfCyynny++sqPr+fCk+Crr
  KN538861.1_FGP008 30 SREQCPRCASHDTKFCYYNNYNTSQPRHFCKSCRR 64
                       5679******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.7E-183165IPR003851Zinc finger, Dof-type
PROSITE profilePS5088417.8493280IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-123364IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MASGSLLLPP ACLQHPLPAA AAAASGGRSS REQCPRCASH DTKFCYYNNY NTSQPRHFCK  60
SCRRRARAAQ GKDDRLTSTE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538861.1_FGP008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072064e-73AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAK1198034e-73AK119803.1 Oryza sativa Japonica Group cDNA clone:002-176-F03, full insert sequence.
GenBankAP0149594e-73AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-73CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880163.11e-28dof zinc finger protein MNB1A-like
TrEMBLB8AMK22e-27B8AMK2_ORYSI; Uncharacterized protein
TrEMBLB9F9Q73e-27B9F9Q7_ORYSJ; Uncharacterized protein
TrEMBLQ6AV251e-27Q6AV25_ORYSJ; Os03g0619100 protein
STRINGOS03T0619151-005e-28(Oryza sativa)
STRINGORGLA03G0243100.15e-28(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.15e-16DOF zinc finger protein 2