PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538861.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 519aa    MW: 59205 Da    PI: 8.9999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538861.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17361171098
                        HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++  + +++p+kf++++gg    s+t+ le+++g ++ vk+  +k+ ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v +++
  KN538861.1_FGP009  36 NFG-QSMTIPNKFLDHFGGT--LSRTIELESPKGVVFIVKV--TKHMNKTILQCGWEAFVDAHQIEENDSLLFRHIENSRF--AVLILD 117
                        344.459*******888877..899****************..*********************************99999..777776 PP
2B363.53.3e-20248347198
                        EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                        f+ v+++s+v+++ ++l++pk++a++h   ++es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  
  KN538861.1_FGP009 248 FVAVMKHSNVNSHrACLIIPKRYASAHF--PHESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTrG 337
                        7788999999988778***********7..446779999985666****99977999999*************************8753447 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        ef  +v+++r
  KN538861.1_FGP009 338 EFGATVHLLR 347
                        7777777776 PP
3B359.27.2e-19423515899
                        -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                 B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                        s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v+
  KN538861.1_FGP009 423 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFQLMNDeSKLTMTVH 511
                        555555112346689***999.3444455566777899*******..77777779**************************998******** PP

                        EE-S CS
                 B3  96 vfrk 99 
                        ++r+
  KN538861.1_FGP009 512 IIRR 515
                        **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2025124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-1926121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11126119IPR003340B3 DNA binding domain
CDDcd100171.11E-1427117No hitNo description
SMARTSM010192.1E-629119IPR003340B3 DNA binding domain
PfamPF023628.3E-1635117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21239349IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-24242335IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-22246347No hitNo description
PfamPF023623.2E-20248348IPR003340B3 DNA binding domain
SMARTSM010196.4E-8248350IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451249349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-22408516IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-19409516IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-15414514No hitNo description
PROSITE profilePS5086311.801416516IPR003340B3 DNA binding domain
SMARTSM010194.7E-6416516IPR003340B3 DNA binding domain
PfamPF023629.3E-19420516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAGQGSQKKK SCDWSKRYVD HLNGKMKCFH LQMSANFGQS MTIPNKFLDH FGGTLSRTIE  60
LESPKGVVFI VKVTKHMNKT ILQCGWEAFV DAHQIEENDS LLFRHIENSR FAVLILDSDG  120
CEKVFTYAGM KRTSSVQERN AAPVDIPSST HDETTQSSGS KKFVRCQRAS DSQRGKTAKL  180
AETSSSGESG EEGTDNSTSE DESSYELDDP QMSPGRNYVL SRWTSLSEAQ EERVDTLVQD  240
IQPEIPVFVA VMKHSNVNSH RACLIIPKRY ASAHFPHESQ TITLQRQGKN KKWYPMFYIR  300
KDGSGYMLYG CWKNFVRDNH VKEGDMCIFH LTKFTRGEFG ATVHLLRETK SGSLGSFHTS  360
HKRFDLRDRR TWPKVTGARR VSSRPYLTAD RVSLTEEQVR KVEEVVHSIQ SEGPMYVSIM  420
NKSNVGTDGL YIIIFGRQFA TRYLPEGEQT LTLLMTGKSN AWQVKMRPRS GDAQMITTGW  480
RHFVHDNHLQ IEDICLFQLM NDESKLTMTV HIIRRNEKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538861.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021690.0AK102169.1 Oryza sativa Japonica Group cDNA clone:J033086H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.10.0B3 domain-containing protein Os03g0620400 isoform X1
SwissprotQ851W50.0Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0D3FLC00.0A0A0D3FLC0_9ORYZ; Uncharacterized protein
STRINGOBART03G26240.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]