PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538863.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 163aa    MW: 18741.4 Da    PI: 9.1371
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538863.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-10971302255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yp++e++ +LA+++gL+ +q+ +WF N+R ++
  KN538863.1_FGP003  97 WPYPTEEDKLRLAARTGLDPKQINNWFINQRKRH 130
                        69*****************************985 PP
2ELK34.35.1e-125071122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK++Ll+KYsg+L+ L++EF+
  KN538863.1_FGP003 50 ELKEMLLKKYSGCLSRLRSEFL 71
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037896.0E-95071IPR005539ELK domain
SMARTSM011883.6E-65071IPR005539ELK domain
PROSITE profilePS5121310.4235070IPR005539ELK domain
PROSITE profilePS5007112.84370133IPR001356Homeobox domain
SMARTSM003891.1E-1372137IPR001356Homeobox domain
SuperFamilySSF466891.2E-1972135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2775133IPR009057Homeodomain-like
CDDcd000861.95E-1382134No hitNo description
PfamPF059202.4E-1790129IPR008422Homeobox KN domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSCKMVIPRS LVYNFMADEM VGSSDEDQCS GETDMLDIGQ EQSSRLADHE LKEMLLKKYS  60
GCLSRLRSEF LKKRKKGKLP KDARSALLEW WNTHYRWPYP TEEDKLRLAA RTGLDPKQIN  120
NWFINQRKRH WKPSDGMRFA LMEGVAGGSS GTTLYFDTGT IGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16574LRSEFLKKRK
27175KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538863.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413120.0AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634297.11e-105homeobox protein knotted-1-like 1
SwissprotQ9FP291e-106KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D3EMI91e-104A0A0D3EMI9_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Y7A21e-104A0A0D9Y7A2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MV671e-104A0A0E0MV67_ORYRU; Uncharacterized protein
TrEMBLI1NM881e-104I1NM88_ORYGL; Uncharacterized protein
STRINGOGLUM01G14210.11e-105(Oryza glumipatula)
STRINGORUFI01G13730.11e-105(Oryza rufipogon)
STRINGOS01T0302500-011e-105(Oryza sativa)
STRINGORGLA01G0097800.11e-105(Oryza glaberrima)
STRINGOBART01G11630.11e-105(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.19e-41KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]