PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538864.1_FGP012

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 882aa MW: 97039.1 Da PI: 6.8475

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538864.1_FGP012	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.5	1.9e-15	85	145	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ KN538864.1_FGP012 85 EAKRRARLVRNRESAHQSRQRKKQYVEELEGKVKVMQATIADLTARISCVTTENAALKQQL 145 78********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.3E-14	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	85	145	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.9E-14	85	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-13	87	145	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-17	87	145	No hit	No description
CDD	cd14704	7.95E-21	88	139	No hit	No description
PROSITE pattern	PS00036	0	91	105	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:3.40.50.300	1.4E-8	630	848	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	4.93E-22	636	865	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00685	4.9E-6	637	842	IPR000863	Sulfotransferase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005794	Cellular Component	Golgi apparatus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008146	Molecular Function	sulfotransferase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MAEPDLLAPF ADLPFPPGDD FPDFPTLGDD AFALEDFDLD DLDFDFDVDL FPPDAPPPNE 60 ESADSSSPSR SGSDGGGGKD GKDDEAKRRA RLVRNRESAH QSRQRKKQYV EELEGKVKVM 120 QATIADLTAR ISCVTTENAA LKQQLGGAAG AGAAAPPPPM PMYPAVYPLP MPWIHPAYAM 180 RGSQVPLVPI PRLKTQQPAS TPEPPAKKAR KTKKVAGVSL LGLLFLMMVC GCLVPAVNRM 240 YGAAYTGEGA AIVPSHHGRI LAVEGPQNSV SNGVDPKVPQ NGSETLPALL YLPRNGKHVK 300 INGNLVIKSI VASEKASSRL SNYGEKGSGN QGKEETSLAI PGYVAPLEAG EVMDSAKGMN 360 ELMALAPGDG SIYREDDGML PQWFSEAMSG PMLNSGMCTE VFQFDLSPTT ADANGIVPVY 420 SGSVTNTSQN YTENLPSGPV QKVKNRRISY SEAIPLRGST SNDTDHFKAP PKNHSQSHAG 480 CKPVSSVVVS VLADPREASD RDGEGRISSN SLSRIFVVVL IDSVNVFAGW NTLLSVRLLE 540 EIAALLHPYS LKSSKGAPFP PRPILVFLIA IFGFYVCYIS FNQITLENRS EENSGEVQAE 600 IHCRKPHLPH EELRYVHFPK PESYIRGECS CNLVRSFVLV SMQRSGSGWF ETLLNSHPNI 660 SSNGEIFNRV DRRENISSIL QTLDKLYNLD WFTSAAKNEC TAAFGLKWML NQGFMDHHDD 720 IASYLNKKGV SVIFLFRRNT LRRLISVLAN DYDRDAKQLN GTHKSHVHSK EEAEILAKFK 780 PVLDVSNLIP NIRNAEKYIR DCLDHFNTTR HMILYYEDIV RNRNALFQVQ EFLGVPVRKL 840 VSRQVKIHTS PLPGLVRNWD DVSNKLNGTQ YAHFLDGADY VR

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MAEPDLLAPF ADLPFPPGDD FPDFPTLGDD AFALEDFDLD DLDFDFDVDL FPPDAPPPNE  60
ESADSSSPSR SGSDGGGGKD GKDDEAKRRA RLVRNRESAH QSRQRKKQYV EELEGKVKVM  120
QATIADLTAR ISCVTTENAA LKQQLGGAAG AGAAAPPPPM PMYPAVYPLP MPWIHPAYAM  180
RGSQVPLVPI PRLKTQQPAS TPEPPAKKAR KTKKVAGVSL LGLLFLMMVC GCLVPAVNRM  240
YGAAYTGEGA AIVPSHHGRI LAVEGPQNSV SNGVDPKVPQ NGSETLPALL YLPRNGKHVK  300
INGNLVIKSI VASEKASSRL SNYGEKGSGN QGKEETSLAI PGYVAPLEAG EVMDSAKGMN  360
ELMALAPGDG SIYREDDGML PQWFSEAMSG PMLNSGMCTE VFQFDLSPTT ADANGIVPVY  420
SGSVTNTSQN YTENLPSGPV QKVKNRRISY SEAIPLRGST SNDTDHFKAP PKNHSQSHAG  480
CKPVSSVVVS VLADPREASD RDGEGRISSN SLSRIFVVVL IDSVNVFAGW NTLLSVRLLE  540
EIAALLHPYS LKSSKGAPFP PRPILVFLIA IFGFYVCYIS FNQITLENRS EENSGEVQAE  600
IHCRKPHLPH EELRYVHFPK PESYIRGECS CNLVRSFVLV SMQRSGSGWF ETLLNSHPNI  660
SSNGEIFNRV DRRENISSIL QTLDKLYNLD WFTSAAKNEC TAAFGLKWML NQGFMDHHDD  720
IASYLNKKGV SVIFLFRRNT LRRLISVLAN DYDRDAKQLN GTHKSHVHSK EEAEILAKFK  780
PVLDVSNLIP NIRNAEKYIR DCLDHFNTTR HMILYYEDIV RNRNALFQVQ EFLGVPVRKL  840
VSRQVKIHTS PLPGLVRNWD DVSNKLNGTQ YAHFLDGADY VR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538864.1_FGP012

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121898	0.0	AK121898.1 Oryza sativa Japonica Group cDNA clone:J033105F09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647746.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	B9FUH4	0.0	B9FUH4_ORYSJ; Uncharacterized protein
STRING	OGLUM07G24220.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-55	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]