PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538867.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 111aa    MW: 12743.3 Da    PI: 4.3069
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538867.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.83.7e-1439794787
             DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
                       ++++e++r da++slvyeA+ r+rdPvyG++g il+lqqq 
  KN538867.1_FGP002 39 QEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQE 79
                       7899**********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.7E-123980IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MSTASVKINV ESPNPNTVIS CYISFLSLFI SDWQDHHDQE VHESQRGDAA NSLVYEANLR  60
LRDPVYGCMG AILTLQQQEG VTIQQLFYLL EFQVAYEKWE ITENQAIRLA Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538867.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343411e-55AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBankAP0149611e-55AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-55CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167556.16e-21LOB domain-containing protein 15-like
TrEMBLA0A287EY343e-20A0A287EY34_HORVV; Uncharacterized protein
TrEMBLA0A452Y3G46e-20A0A452Y3G4_AEGTS; Uncharacterized protein
STRINGMLOC_56075.12e-20(Hordeum vulgare)
STRINGTraes_1DS_BB8508CC6.12e-20(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-18LOB domain-containing protein 13