PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538867.1_FGP022
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 152aa    MW: 17139.8 Da    PI: 10.8254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538867.1_FGP022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12448554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  KN538867.1_FGP022  4 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 48
                       9*************************.....67**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.38148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-13361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MRIHSEAERR RRERINAHLA TLRRILPDAK QMDKATLLAS VVNQVKHLKT RATEASTPST  60
AATIPPEANE VTVQCYAGGE HTAAARTYVR ATEMKPWMHK PKWGLHEVEV EATKGINVVF  120
SRTALMLTRK KVNAKVERSP EKQRTADVTY LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538867.1_FGP022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106191e-136AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.13e-49putative transcription factor bHLH107
RefseqXP_015638378.13e-49putative transcription factor bHLH107
RefseqXP_015638379.13e-49putative transcription factor bHLH107
TrEMBLA0A0D3G3L91e-55A0A0D3G3L9_9ORYZ; Uncharacterized protein
STRINGOBART05G04450.12e-56(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-09bHLH family protein