PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538868.1_FGP050
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 216aa    MW: 23208.6 Da    PI: 4.7764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538868.1_FGP050genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-16141189148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  KN538868.1_FGP050 141 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 189
                        79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.397136193IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-20139188IPR009057Homeodomain-like
SMARTSM007173.7E-12140191IPR001005SANT/Myb domain
PfamPF002493.6E-15141189IPR001005SANT/Myb domain
SuperFamilySSF466893.92E-18142215IPR009057Homeodomain-like
CDDcd001671.78E-9143189No hitNo description
Gene3DG3DSA:1.10.10.602.8E-5189214IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAGAEEGRGR QHSSLWMSAT AKGNGDDAPP TGGDDDKATE GIRGSSAGMY TDKRSVSEDT  60
HLCTRSPLLP NTPSPPPPPA ASYTSSPSSG TSDPSVLDLS SAEIDDDGDG DDDRAEQQEI  120
KNSKELVMGR APCCDKASVK KGPWSPEEDA KLKAYIEENG TGGNWIALPQ KIGLKRCGKS  180
CRLRWLNYLR PNIKHGDFTE EEEHIICSLY ISIGSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538868.1_FGP050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040571e-159AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06.
GenBankAP0149581e-159AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624187.11e-83uncharacterized protein LOC4330950
TrEMBLA0A0D9YZD71e-101A0A0D9YZD7_9ORYZ; Uncharacterized protein
STRINGOGLUM02G36330.11e-102(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-58myb domain protein 84