PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538869.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 932aa MW: 101392 Da PI: 5.4696

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538869.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	8e-41	102	179	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl+ +++yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ KN538869.1_FGP001 102 ACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRP 179 5**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.1E-34	96	164	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.394	100	177	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	101	181	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-30	103	176	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.05E-8	713	819	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.4E-7	717	822	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.95E-8	719	819	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MEAARVGAQS RHFSPSSSEE AGAASVRNVN VRGDSDKRKR VVVIDDDDVE DDELVENGGG 60 SLSLRIGGDA VAHGAGVGGG ADEEDRNGKK IRVQGGSPSG PACQVEGCTA DLTGVRDYHR 120 RHKVCEMHAK ATTAVVGNTV QRFCQQCSRF HPLQEFDEGK RSCRRRLAGH NRRRRKTRPE 180 VAVGGSACTE DKVSSYLLLG LLGVCANLNG NVFMDSTIVL AADNAEHLRG QELLSGLLRN 240 LGAVAKSLDP KELCKLLEAC QSMQDGSNAG TSETANALVN TAVAEAAGPS NSKMPFVNGD 300 QCGLASSSVV PVQSKSPTVA TPDPPACKLK DFDLNDTCGG MEGFEDGYEG SPTPAFKTTD 360 SPNCPSWMHQ DSTQSPPQTS GNSDSTSAQS LSSSNGDAQC RTDKIVFKLF EKVPSDLPPV 420 LRSQILGWLS SSPTDIESYI RPGCIILTVY LRLVESAWKE LSDNMSSNLD KLLNSSTGNF 480 WASGLVFVMV RHQIAFMHNG QLMLDRPLAN SAHHYCKILC VRPIAAPFST KVNFRVEGLN 540 LVSDSSRLIC SFEGSCIFQE DTDNIVDDVE HDDIEYLNFC CPLPSSRGRG FVEVEDDGFS 600 NGFFPFIIAE QDICSEVCEL ESIFESSSHE QADDDNARNQ ALEFLNELGW LLHRANIISK 660 QDKVPLASFN IWRFRNLGIF AMEREWCAVT KLLIDFLFIG LVDIGSKSPE EVVLSENLLH 720 AAVRMKSAQM VRFLLGYKPN ESLKGTAETF LFRPDVQGPS KFTPLHIAAA TDDAEDVLDA 780 LTNDPGLVGI NTWRNARDNA GFTPEDYARQ RGNDAYLNMV EKKINKHLGK GHVVLGVPSS 840 IHPVITDGVK PGEVSLEIGM TVPPPAARCN ACSRQARMYP NSTARTFLYR PAMLTVMGIA 900 VICVCVGLLL HTCPKVYAAP TFRWELLERG PM

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MEAARVGAQS RHFSPSSSEE AGAASVRNVN VRGDSDKRKR VVVIDDDDVE DDELVENGGG  60
SLSLRIGGDA VAHGAGVGGG ADEEDRNGKK IRVQGGSPSG PACQVEGCTA DLTGVRDYHR  120
RHKVCEMHAK ATTAVVGNTV QRFCQQCSRF HPLQEFDEGK RSCRRRLAGH NRRRRKTRPE  180
VAVGGSACTE DKVSSYLLLG LLGVCANLNG NVFMDSTIVL AADNAEHLRG QELLSGLLRN  240
LGAVAKSLDP KELCKLLEAC QSMQDGSNAG TSETANALVN TAVAEAAGPS NSKMPFVNGD  300
QCGLASSSVV PVQSKSPTVA TPDPPACKLK DFDLNDTCGG MEGFEDGYEG SPTPAFKTTD  360
SPNCPSWMHQ DSTQSPPQTS GNSDSTSAQS LSSSNGDAQC RTDKIVFKLF EKVPSDLPPV  420
LRSQILGWLS SSPTDIESYI RPGCIILTVY LRLVESAWKE LSDNMSSNLD KLLNSSTGNF  480
WASGLVFVMV RHQIAFMHNG QLMLDRPLAN SAHHYCKILC VRPIAAPFST KVNFRVEGLN  540
LVSDSSRLIC SFEGSCIFQE DTDNIVDDVE HDDIEYLNFC CPLPSSRGRG FVEVEDDGFS  600
NGFFPFIIAE QDICSEVCEL ESIFESSSHE QADDDNARNQ ALEFLNELGW LLHRANIISK  660
QDKVPLASFN IWRFRNLGIF AMEREWCAVT KLLIDFLFIG LVDIGSKSPE EVVLSENLLH  720
AAVRMKSAQM VRFLLGYKPN ESLKGTAETF LFRPDVQGPS KFTPLHIAAA TDDAEDVLDA  780
LTNDPGLVGI NTWRNARDNA GFTPEDYARQ RGNDAYLNMV EKKINKHLGK GHVVLGVPSS  840
IHPVITDGVK PGEVSLEIGM TVPPPAARCN ACSRQARMYP NSTARTFLYR PAMLTVMGIA  900
VICVCVGLLL HTCPKVYAAP TFRWELLERG PM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	96	176	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538869.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072164	0.0	AK072164.1 Oryza sativa Japonica Group cDNA clone:J013130O11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631511.1	0.0	squamosa promoter-binding-like protein 6 isoform X1
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A0D9ZFD6	0.0	A0A0D9ZFD6_9ORYZ; Uncharacterized protein
STRING	OGLUM03G39810.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]