PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538871.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 1138aa    MW: 123637 Da    PI: 7.6606
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538871.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.16.7e-192753091
               FAR1 30 krtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                       +r+fvC keg+r+ + k+            + + rrtra+tr+gCka+++vkk+++g+w vtkle+ HnH+l+p
  KN538871.1_FGP005  2 SRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLETTHNHPLVP 75
                       799*************************99999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-16275IPR004330FAR1 DNA binding domain
PfamPF105511.0E-14136208IPR018289MULE transposase domain
PROSITE profilePS509669.916384432IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-7406429IPR007527Zinc finger, SWIM-type
SMARTSM005755.5E-7407434IPR006564Zinc finger, PMZ-type
SMARTSM013292.4E-1347681124IPR024084Isopropylmalate dehydrogenase-like domain
TIGRFAMsTIGR001691.1E-1238461124IPR004429Isopropylmalate dehydrogenase
SuperFamilySSF536591.04E-928461128No hitNo description
Gene3DG3DSA:3.40.718.103.0E-1038471129IPR024084Isopropylmalate dehydrogenase-like domain
PfamPF001802.6E-1118541124IPR024084Isopropylmalate dehydrogenase-like domain
PROSITE patternPS00470010151034IPR019818Isocitrate/isopropylmalate dehydrogenase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009098Biological Processleucine biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0009570Cellular Componentchloroplast stroma
GO:0009941Cellular Componentchloroplast envelope
GO:0000287Molecular Functionmagnesium ion binding
GO:0003862Molecular Function3-isopropylmalate dehydrogenase activity
GO:0008270Molecular Functionzinc ion binding
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 1138 aa     Download sequence    Send to blast
MSRQFVCAKE GFRTYRGKNE VSPVAAGSGE DSGRGRRTRA VTRVGCKAMI RVKKQDNGRW  60
AVTKLETTHN HPLVPPNQAH CLRPHKPLSE CGKQRQFGIP RNGGMLLAIE PPPPPISPPV  120
PQTSVLQVVP HYTRDGIGDH ARPVLFGCAI IGDNSETSFV WLFETLLLAM SGHHPDSLTT  180
EHDSAIQLAA LKVLPRTRHR FCRWHILNET HDKLSHLSDE FPSLHEELVN CINMPETIDE  240
FEVNFKALIS KVGPGNSEWL YSVYNCRQHW VPVYLRDTFF GDESSKEECA SRSSFFDGYI  300
SAKTDPQSFI QQYEKALDCC YEKEVKEEFE TKYSLPEIKT SSPIEKQGAD LYTRSMFLKF  360
QQELVDASVS SLEVMKEDGK SRIYKVTKSA GSEKPHMVEF NSFGSSATCS CQMFEHLGIV  420
CRHILTIFGT QGVSSLPSQY IVKRWTKYAM ERSPDKKIDE ASKVNEPKEE QKSGAEDGEQ  480
SQTWRYNSLC REALRYAEEG ASSVEVYIVA MQALQEAANK VNMAKRGIGQ VAPNAPLAVM  540
PIAAQLPAEG FRNVQEISFN QRKKRKRNSN NKTTENSSNQ LMYLQQPVNF LFVAPGTSSG  600
PQGPSQIVAA VPVSSSAPHG QTTSANHPID GNTTSCSVAA QKNSDLSNYS ASAPSLGNVV  660
PEGEIKSSGF ASQIKEIKIL VGIINRINYS HELSQGNGNK GNNVNMASST SSPQLVTVPV  720
GLCLPSMDSS KISADAINST NSGSMISNGN ASFGLCQSQS TNADPRSTPE GSSIRAAAIA  780
AGARIASPSD AASIIKAAQS KGAIHIRPGE GVPNYLKPLA PQPLSSLPPG SIPNSVHPSS  840
SHAQPGQYKW DNNEKHLKPE TGLLQIRAGL GVFANLRPAA VLPQLVDAST LKKEVAEGVD  900
IMVVRELTGG IYFGQPRGFG KNDKGEDTGF NTEVYSASEI DRIARVAFEV ARKRRGKLCS  960
VDKANVLEAS MLWRKRVTSL ASEFPDIELS HMYVDNAAMQ LIRNPKQFDT IVTNNIFGDI  1020
LSDEASMLTG SIGMLPSASV GESGPGLFEP IHGSAPDIAG QDKANPLATI LSAAMLLRYG  1080
LGEENAAKRV EASVTETLNN GFRTGDIYSP GTTLVGCKRM GEEVLKTVES QSAVAVNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3r8w_A1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
3r8w_B1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
3r8w_C1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
3r8w_D1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_A1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_B1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_C1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_D1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_E1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_F1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_G1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
5j33_H1e-17484611361154053-isopropylmalate dehydrogenase 2, chloroplastic
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1561566RKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538871.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338590.0AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAC1380040.0AC138004.3 Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631605.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLQ7Y0910.0Q7Y091_ORYSJ; Putative far-red impaired response protein
STRINGOS03T0655600-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-103FAR1-related sequence 3