PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538872.1_FGP046
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 192aa    MW: 20347.7 Da    PI: 4.4353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538872.1_FGP046genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-1028522247
                       T-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                       ++W++Ia++++ gRt++++k++w+++
  KN538872.1_FGP046 28 RRWSKIAARLP-GRTDNEIKNHWNTH 52
                       47*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.168157IPR017930Myb domain
SuperFamilySSF466891.09E-92362IPR009057Homeodomain-like
PfamPF002493.5E-82852IPR001005SANT/Myb domain
CDDcd001673.28E-82853No hitNo description
Gene3DG3DSA:1.10.10.602.1E-142866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDGRRGPEAG HLPPLQWPLL LEARPQARRW SKIAARLPGR TDNEIKNHWN THIKKKLKKM  60
GLDPVTHQPV ISLAQPDPLK QQQQEPSVSG GTGADDKEEE ETPTSAQPQG VACAASSASA  120
VSSSCSSSAS ASAATPGADV DWPGLFEVDA ILDIDWAGLL SACGDDGGCG AIGVDMMFDQ  180
CSDVGFDQDV WM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538872.1_FGP046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624871.13e-86protein ODORANT1
TrEMBLA0A0E0NKK44e-85A0A0E0NKK4_ORYRU; Uncharacterized protein
TrEMBLA2X9A44e-85A2X9A4_ORYSI; Uncharacterized protein
STRINGORUFI02G33090.17e-86(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-22myb domain protein 20