PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538873.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 719aa    MW: 77392.4 Da    PI: 4.6946
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538873.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.94e-125535812351
            G2-like  23 GsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        G+ +AtPk++l+lm++kgLtl+h+kSHLQ
  KN538873.1_FGP007 553 GAGEATPKSVLRLMGMKGLTLYHLKSHLQ 581
                        7889************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5094220.11620145IPR013809ENTH domain
SuperFamilySSF484641.94E-2924158IPR008942ENTH/VHS
Gene3DG3DSA:1.25.40.903.5E-3125157IPR008942ENTH/VHS
SMARTSM002731.5E-2626145IPR013809ENTH domain
CDDcd035716.77E-4027142No hitNo description
PfamPF014177.5E-2527140IPR013809ENTH domain
Gene3DG3DSA:1.10.10.601.5E-10553582IPR009057Homeodomain-like
PfamPF143791.7E-10575606IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006623Biological Processprotein targeting to vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005884Cellular Componentactin filament
GO:0009579Cellular Componentthylakoid
GO:0002020Molecular Functionprotease binding
GO:0003677Molecular FunctionDNA binding
GO:0030276Molecular Functionclathrin binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MDFVKVFDQA VREIKREVNL KVLKVPELEQ KVLDATSDEP WGPHGTTLSE LSHATKKFTG  60
ALYYEFYIGH YANTNGKALT IIEYLIANGS ERAVDDILDH YSKISVLSSF EYVEPNGKDA  120
GINVRKKVET ILGLINDKEK IKSVREKAAS NRDKYVGLSS TGITYKSSSA SFGSNYSSGE  180
RYGSFSGTRE GDSYGDSYRD KEPVKSSPSY TGGQKSGSRI RKDVNRRNED SPTSLKSNAK  240
GNEDDFDDFD PRGSSSNGAA NTNTSGVDLF APNLLDDFID VPAAATHETN DSADAQVDLF  300
ADADFQSAIP STETAAGSDV QGNVDLFAEQ PAFTAAFPPQ TGFIPPPSSV TSEANTSTSK  360
NTTPEPFDPF GAIPINSFDG SDPFGAFNSN VGSSSIPPPT QSSVGNISTP SQNPQAASDF  420
GGFVSSTVET AAKDPFDFSS SNLGKTPLAD PKADASDFGA FVSHSEEVAK DPFDLSSSTS  480
SGRTNQAPLA APKSDTKKEN FQVKSGIWAD SLSRGLIDLN ITGPKKVNLA DVGIVGGLDD  540
GSDDKALPSW TMGAGEATPK SVLRLMGMKG LTLYHLKSHL QVQKKLQMRI EAQGRYLKEI  600
LDKAQKNISP DANGSANLSS TRSQITDINL ALSSFMDNAT QVQEENNELM KPISDDNLKV  660
NNLGFQLYHL GSQESKDVKC TPKTEELLLL DLNIQGGYEL SSRGMQGCEL DLKINQQRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xgw_A2e-201116018175Epsin 4
3onk_A1e-202715811150Epsin-3
3onl_A1e-202715811150Epsin-3
3onl_B1e-202715811150Epsin-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538873.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1217480.0AK121748.1 Oryza sativa Japonica Group cDNA clone:J033087C14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635407.10.0clathrin interactor EPSIN 1
TrEMBLA0A0D9ZQ550.0A0A0D9ZQ55_9ORYZ; Uncharacterized protein
STRINGOGLUM04G23940.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-12G2-like family protein