PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538877.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 432aa    MW: 47731 Da    PI: 5.1467
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538877.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.32.5e-11263287125
            G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                        kprlrWtpeLHerFv+av++L G+e
  KN538877.1_FGP007 263 KPRLRWTPELHERFVDAVNKLEGPE 287
                        79*******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-9262309IPR009057Homeodomain-like
PfamPF143795.6E-22327373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSTQSVIAVK QFSGPDKMAQ AYTVPQPSAH MLSNANYDLC GSTNSTSLSC AIQSSNIKTE  60
SISSSSLPKI LPFSTDSNAE SSLSRMSQAE FSDPILSSSS TFCTGLYTSS SMNSGSCRKT  120
GDLPFLPHPP KCEQQQNSAG QSSSSLMLLD ADLRNSGHVD DEHTDDLKDF LNLSSDCSFL  180
GKCSAMAYNE QMEFQFLSEQ LGIAISNNEE SPRLDDMYDR PPQLLSLPVS SCSDQEDLQD  240
ARSPAKVQLS SSRSSSGTAS CNKPRLRWTP ELHERFVDAV NKLEGPESRK YRLAKYLPET  300
KEDKKQEEKK AKSVANGNDH AKKKSAQMAE ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA  360
RYLQKILEEQ QKARESISSV TSTTEGESPE FAPMEKTEDK AETSSEPLSK CRITDTDAEC  420
HSKVDNKKTA SG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538877.1_FGP007
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0657040.0AK065704.1 Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627390.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_015627391.10.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ40.0PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A0E0CFB30.0A0A0E0CFB3_9ORYZ; Uncharacterized protein
STRINGOMERI02G03900.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.23e-43G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]