PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538878.1_FGP037
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 151aa    MW: 17065.2 Da    PI: 7.1901
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538878.1_FGP037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.71.5e-1841108268
           trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                        Wt  e+++L+ea++++ +  r ++ +  ++W++v +++++rg++rs++qC+++w+nl ++ykk++++e
  KN538878.1_FGP037  41 WTLPETMLLVEAKKRVSDGRRpAADQGLARWRWVEDYCWRRGCRRSQNQCNDRWDNLMRDYKKVRAHE 108
                        *************99988888357899*************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0843398IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-634100IPR009057Homeodomain-like
SuperFamilySSF466891.71E-536100IPR009057Homeodomain-like
PfamPF138371.4E-1439108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDAGGYGADV LLGQAEEDEE AMNAAANAMA AAAREYRRGN WTLPETMLLV EAKKRVSDGR  60
RPAADQGLAR WRWVEDYCWR RGCRRSQNQC NDRWDNLMRD YKKVRAHELA LAAGGGGPAE  120
SYWVMGRTER KERGLPANLL REIYDAMGEV V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538878.1_FGP037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1357920.0AC135792.3 Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879661.15e-79trihelix transcription factor ASR3
TrEMBLA0A0D3FM563e-79A0A0D3FM56_9ORYZ; Uncharacterized protein
TrEMBLI1PE574e-79I1PE57_ORYGL; Uncharacterized protein
STRINGORGLA03G0265300.17e-80(Oryza glaberrima)
STRINGOBART03G28660.15e-80(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.15e-40Trihelix family protein