PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538886.1_FGP018
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 341aa    MW: 37013.1 Da    PI: 5.9149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538886.1_FGP018genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.7e-09192239455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  KN538886.1_FGP018 192 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 239
                        8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.81E-11186243No hitNo description
SuperFamilySSF474591.44E-17186258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17188260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6192239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MESLCGQLEH EHEQQLHQSS SSSLLPYCFL SAPEPLPVPG FPAGCSNLEE KAAAAMAAYE  60
YESSSCSSLD PTSMPMVYSP IVLQPQECPL SFDFDNAAAA AAAGDNKWVP GIQGSCPCSL  120
GSTQDMDASW GKSRKHKRSS VDLKGLEEKK ARRVVLHQHD DDVKKKAKEA AGGEPPAGYI  180
HVRARRGQAT DSHSLAERVR REKISERMKM LQSLVPGCDK VTGKALMLDE IISYVQSLQN  240
QVEFLSMKLA SLSPMMYEFG PGIDMYPDVL PQLAKMPHEM VQCMGQMGST GISLQGLGGG  300
PTGFAQDGSS HMNMVVMQVG EQGQQQGSLH QVEMSSHCFF Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538886.1_FGP018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
GenBankHQ8588530.0HQ858853.1 Oryza sativa Japonica Group isolate UT1616 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640733.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640734.10.0transcription factor bHLH63 isoform X1
RefseqXP_015640735.10.0transcription factor bHLH63 isoform X1
SwissprotQ93W883e-51BH137_ARATH; Transcription factor bHLH137
TrEMBLB8AWJ50.0B8AWJ5_ORYSI; Uncharacterized protein
STRINGOMERI05G00220.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]