PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538889.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 191aa    MW: 20274.6 Da    PI: 7.6516
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538889.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1361.1e-4230123396
              NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                        +++++lP+an++r+mkkvlP++aki+ +ak+++++c++ef++fv++eas+k+++e+r+t++++d+l ++++lGf++yv+p+++y++ yre+e
  KN538889.1_FGP010  30 ATNAELPMANLVRLMKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 121
                        68999**************************************************************************************9 PP

              NF-YB  95 ge 96 
                        ++
  KN538889.1_FGP010 122 RA 123
                        86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-2528123IPR009072Histone-fold
PfamPF008081.4E-133393IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.24E-2334153IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAGNKKRGGR NMDQVEKAAA ARSDGEGGSA TNAELPMANL VRLMKKVLPG KAKIGGAAKG  60
LTHDCAVEFV GFVGDEASEK AKAEHRRTVA PEDYLGSFGD LGFDRYVDPM DAYIHGYREF  120
ERAGGNRRVA PPPPAAATPL TPGGPTFTDA ELQFLRSVIP SRSDDQYHGS SPAIGGYDYG  180
YGPYGGYGKN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-24351191397NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538889.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3002180.0AJ300218.1 Oryza sativa nf-yb1 gene and nf-YB1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624776.11e-105nuclear transcription factor Y subunit B-1
SwissprotQ6Z3481e-106NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0D9YXN11e-110A0A0D9YXN1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G31560.11e-110(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-22nuclear factor Y, subunit B4