PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538891.1_FGP038

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 60aa MW: 6681.34 Da PI: 6.5135

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538891.1_FGP038	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	25	53	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT +Ed llv+ v+q+G g+W+++++ KN538891.1_FGP038 25 KGPWTSQEDALLVEHVRQHGEGRWNSVSK 53 79*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.642	20	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-11	22	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.53E-9	23	55	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-9	25	53	IPR001005	SANT/Myb domain
CDD	cd00167	1.21E-6	27	53	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MAAAEVQSAA GWGRQLQQDG GGWRKGPWTS QEDALLVEHV RQHGEGRWNS VSKLTVDFFN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538891.1_FGP038

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109620	2e-80	AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
GenBank	AL662969	2e-80	AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBank	AP014960	2e-80	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-80	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855213	2e-80	CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634463.1	5e-31	transcription factor WER
TrEMBL	Q7XM98	1e-30	Q7XM98_ORYSJ; OSJNBa0043L24.19 protein
STRING	ORUFI04G19690.1	2e-30	(Oryza rufipogon)
STRING	OS04T0508500-01	2e-30	(Oryza sativa)
STRING	ORGLA04G0153500.1	2e-30	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP53918	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	4e-14	myb domain protein 79