PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538894.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 245aa    MW: 26974.8 Da    PI: 10.6793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538894.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161156147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W +eEd ll ++v+q+G+++W+ I+  ++ gR++k+c++rw + 
  KN538894.1_FGP003 11 KGSWRAEEDALLTRLVAQHGPHRWSIISGAIP-GRSGKSCRLRWCNQ 56
                       799*****************************.***********985 PP
2Myb_DNA-binding60.14.7e-1965107347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T++Ed ll+ a++++G++ W+tIar ++ gRt++++k++w++ 
  KN538894.1_FGP003  65 PFTPQEDALLAAAHARHGNK-WATIARLLP-GRTDNSVKNHWNSN 107
                        89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.682657IPR017930Myb domain
SuperFamilySSF466895.75E-299104IPR009057Homeodomain-like
SMARTSM007177.5E-151059IPR001005SANT/Myb domain
PfamPF002495.0E-151156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231263IPR009057Homeodomain-like
CDDcd001675.68E-131355No hitNo description
PROSITE profilePS5129424.66458112IPR017930Myb domain
SMARTSM007173.0E-1662110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2364110IPR009057Homeodomain-like
PfamPF002491.4E-1665107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGMCSKTLRK KGSWRAEEDA LLTRLVAQHG PHRWSIISGA IPGRSGKSCR LRWCNQLNPA  60
VKHRPFTPQE DALLAAAHAR HGNKWATIAR LLPGRTDNSV KNHWNSNLRR CLRRQAKFKS  120
SKDPDLLPDP IPAHYDDDEP ADRPVTPPAI IQAQAQETVP SLTLSLSLSL PGAAAAEVEV  180
APPPPPRALA AASEIQYDGS SRSSSASRVM LQVMRQMVRE EVQRHTAQLA YSLMALATCS  240
RRPPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-37111104103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-361111058157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-361111058157MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-37111104103C-Myb DNA-Binding Domain
1msf_C6e-37111104103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538894.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106310.0AK110631.1 Oryza sativa Japonica Group cDNA clone:002-169-B11, full insert sequence.
GenBankAP0032280.0AP003228.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0020E09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878300.11e-116transcription factor MYB44
TrEMBLA0A0D3EZD11e-115A0A0D3EZD1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YKV11e-115A0A0D9YKV1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N8C41e-115A0A0E0N8C4_ORYRU; Uncharacterized protein
TrEMBLI1NVS31e-115I1NVS3_ORYGL; Uncharacterized protein
TrEMBLQ84SF01e-115Q84SF0_ORYSJ; Os01g0977300 protein
STRINGOGLUM01G50230.11e-115(Oryza glumipatula)
STRINGORUFI01G49370.11e-115(Oryza rufipogon)
STRINGOS01T0977300-011e-115(Oryza sativa)
STRINGORGLA01G0396300.11e-115(Oryza glaberrima)
STRINGOBART01G45880.11e-115(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-48myb domain protein 77