PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538894.1_FGP017
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 184aa    MW: 19847 Da    PI: 5.1476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538894.1_FGP017genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-076598135
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                       +g+WT++Ed +lv  v++lG ++W+  a+  g  R
  KN538894.1_FGP017 65 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSG-LR 98
                       79***********************9999888.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576130No hitNo description
PROSITE profilePS500906.3076398IPR017877Myb-like domain
SuperFamilySSF466897.02E-66394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-66498IPR009057Homeodomain-like
CDDcd001671.20E-46798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MVVAGKKQQG RSSSMHSFSS SSSSSSSSSC SVVQLGHHQR PQGEDPLIGI KAAAAGGGGG  60
GIMRKGPWTE QEDVQLVWFV RLLGERRWDF LAKVSGLRGG GNLQQQPQPA PAEDESSASG  120
SLQAQHHEDQ HQLFLHPLWN DDIIVDVDCW SSSTNVVAPP PMPASPLWDI DDAFFSDYSL  180
PLWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538894.1_FGP017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661801e-123AK066180.1 Oryza sativa Japonica Group cDNA clone:J013058H19, full insert sequence.
GenBankAP0036271e-123AP003627.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0459B04.
GenBankAP0149571e-123AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY5696151e-123AY569615.1 Oryza sativa (japonica cultivar-group) MYB transcription factor (Myb) precursor RNA, complete cds.
GenBankCP0126091e-123CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621159.16e-46transcription factor MYB59
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3776533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.17e-13myb domain protein 48