PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538894.1_FGP022
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18202.8 Da    PI: 10.1677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538894.1_FGP022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.7e-222471249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       rie++  rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y +
  KN538894.1_FGP022 24 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 71
                       8*******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.1561575IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-261585IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-301574IPR002100Transcription factor, MADS-box
CDDcd002652.66E-391690No hitNo description
PRINTSPR004042.0E-201737IPR002100Transcription factor, MADS-box
PfamPF003192.1E-252471IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-203752IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-205273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAMQVAAPAR RRPSLGRQKI EIRRIESEEA RQVCFSKRRA GFFKKASELS ILCSADVAAV  60
VFSPAGKAYS FGHPSVECLL ERFLPDSSSS GAAARVRRGA NNNNGSGGMV GELNRQYGEL  120
RAMVEAHKAR RERADEKIEM ERAAGSMYRP YQACANLYAP LQMTD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538894.1_FGP022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036270.0AP003627.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0459B04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640475.16e-85agamous-like MADS-box protein AGL29
TrEMBLA0A0D3EZB41e-83A0A0D3EZB4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0N8A22e-83A0A0E0N8A2_ORYRU; Uncharacterized protein
TrEMBLA2WZN31e-83A2WZN3_ORYSI; Uncharacterized protein
TrEMBLI1NVQ91e-83I1NVQ9_ORYGL; Uncharacterized protein
TrEMBLQ94CT01e-83Q94CT0_ORYSJ; MADS-box protein-like
STRINGORUFI01G49230.13e-84(Oryza rufipogon)
STRINGOS01T0975800-002e-84(Oryza sativa)
STRINGORGLA01G0394900.12e-84(Oryza glaberrima)
STRINGOBART01G45740.12e-84(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.17e-23AGAMOUS-like 28