PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538899.1_FGP016

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 198aa MW: 22405.4 Da PI: 8.9552

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538899.1_FGP016	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.9	1e-49	31	156	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+ KN538899.1_FGP016 31 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVK 121 79*************************.89***********888889*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy g+apkg +++W+m+eyrl KN538899.1_FGP016 122 VEGDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 156 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.213	30	185	IPR003441	NAC domain
SuperFamily	SSF101941	1.18E-54	30	164	IPR003441	NAC domain
Pfam	PF02365	3.2E-25	32	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MRGSDHHQDV VAAPRGGGGG GDDGQAHDMV MPGFRFHPTE EELIEFYLRR KVEGKRFNIE 60 LIAFVDLYRY DPWDLPALAS IGDKEWFFYV PRDRKYRNGD RPNRVTPSGY WKATGADRMV 120 KVEGDRPIGL KKTLVFYVGK APKGLRSSWI MNEYRLPHGD ADRYQKIAFD VVTGRQASIC 180 TAYAIGTSCL SAGDEIKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	32	156	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	32	156	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	32	156	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	32	156	19	142	NO APICAL MERISTEM PROTEIN
4dul_A	1e-53	32	156	19	142	NAC domain-containing protein 19
4dul_B	1e-53	32	156	19	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538899.1_FGP016

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068393	0.0	AK068393.1 Oryza sativa Japonica Group cDNA clone:J013151L09, full insert sequence.
GenBank	AK071052	0.0	AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBank	AK072275	0.0	AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
GenBank	KP033189	0.0	KP033189.1 Oryza sativa cultivar Dong Jin NAC-related protein 49 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659059.1	1e-98	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Refseq	XP_025822212.1	6e-99	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	2e-87	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	Q0J8G0	1e-144	Q0J8G0_ORYSJ; Os08g0113500 protein
STRING	ORUFI08G01040.1	1e-114	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	2e-89	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]