PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538900.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 142aa    MW: 15005.9 Da    PI: 10.6107
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538900.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.78.5e-201493887
           trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                       mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  KN538900.1_FGP010  1 MRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 49
                       899******************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-12150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRRLGYSRSS KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRNKAALNSS  60
AAAPALPPPE HAEPAVTVAA PISQTPPPPP QPVTTTKNGN GTSSTNGEGG GGGSGGMQMQ  120
ASNGSVVAGN KFFTGAAAKK VS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538900.1_FGP010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252960.0AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402317.11e-44trihelix transcription factor GTL1 isoform X1
RefseqXP_020402318.11e-44trihelix transcription factor GTL1 isoform X2
TrEMBLA0A0E0BCQ11e-55A0A0E0BCQ1_9ORYZ; Uncharacterized protein
STRINGOGLUM10G15720.12e-56(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-31Trihelix family protein