PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538902.1_FGP025
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 35680.5 Da    PI: 5.7545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538902.1_FGP025genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12104146754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  KN538902.1_FGP025 104 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 146
                        79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.12997146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16102175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9104146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-5104151No hitNo description
Gene3DG3DSA:4.10.280.105.5E-16104167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDASPFQELA SMAAPPPQHP HEEFNFDCLS EVCNPYRSCG AQLVPSEAAS QTQTQLTPLR  60
DAMVAEEETS GDKAALLHGG GGSGVGGGVH PRSKLHGTPS KNLMAERRRR KRLNDRLSML  120
RSIVPKISKM DRTSILGDTI DYVKELTERI KTLEEEIGAT PEELDLLNTM KDSSSGNNNE  180
MLVRNSTKFD VEKRGSGNTR IEICCPANPG VLLSTVSALE VLGLEIEQCV VSCFSDFGMQ  240
ASCLQEDGKR QVVSTDEIKQ TLFRSAGYGG RNYSRSSTCI YEFIFISSGS TSFLNTPESK  300
LKICSSIKWF IWFCPELYII CARI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105112ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538902.1_FGP025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629094.10.0transcription factor bHLH93
SwissprotQ9LSL15e-62BH093_ARATH; Transcription factor bHLH93
TrEMBLQ8H8E40.0Q8H8E4_ORYSJ; Putative bHLH transcription protein
STRINGOPUNC03G02570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-64beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]