PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538904.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 307aa    MW: 33723.9 Da    PI: 5.8591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538904.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-102162561055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  KN538904.1_FGP001 216 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 256
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-13207265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-12215260No hitNo description
PfamPF000109.0E-8216256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERSYTSAVP LIEADAMAQF LGAHGDHCFT YEQMDESMEA MAAMFLPGLD TDSNSSSGCL  60
NYDVPPQCWP QHGHSSSVTS FPDPAHSYGS FEFPVMDPFP IADLDAHCAI PYLTEDLIIP  120
GNHPSPRVEE TAKVTPVATR RKSSAAMTAS KKSKKAGKKD PIGSDEGGNT YIDTQSSSSC  180
TSEEGNLEGN AKPSSKKMGT RANRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD  240
ISTMLEEAVQ YVKFLQLQIK LVKYLPNFAA NYHVQLLSSD DMWMYAPIAY NGVNISNIDL  300
NISSLQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538904.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.10.0transcription factor bHLH54
TrEMBLA0A0E0EDT80.0A0A0E0EDT8_9ORYZ; Uncharacterized protein
STRINGOMERI07G17550.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.16e-35root hair defective 6-like 4