PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538904.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 227aa    MW: 24437 Da    PI: 6.7792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538904.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011143165123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C   F++   L  H+r+H
  KN538904.1_FGP013 143 HKCSICRLEFPSGQALGGHMRVH 165
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.13E-895165No hitNo description
PfamPF139125.1E-996120IPR007087Zinc finger, C2H2
SMARTSM003550.8997119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.66397119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM003550.025143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621143165IPR007087Zinc finger, C2H2
PfamPF139125.1E-9143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGLNEKPLVP PLSPTPVDFR AHQGCPSKHH DFDASKSRNI SGSVAIGSDS EEEYLATSLL  60
MLAHGIRDET EDIRGVGDIK GVGVDTLEVV KPSQRVYECS VCGKVYWCYQ ALGGHMTCHR  120
NLFAQVVAGD ELSYDGTMVV KGHKCSICRL EFPSGQALGG HMRVHYVGGV EGGSVKEKNV  180
VKTKVTGALK PVLKDFDLNV PVVATMVGDE AESSPSEAKR ARMMPLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538904.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY3952940.0AY395294.1 Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647208.11e-154zinc finger protein AZF3
TrEMBLI1QBT21e-153I1QBT2_ORYGL; Uncharacterized protein
STRINGOMERI07G17580.11e-157(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.17e-23C2H2 family protein