PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538907.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 165aa    MW: 17975.3 Da    PI: 9.6478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538907.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.0006260911854
                       HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +++  L++++ +      +K + a++L +A++YIk L
  KN538907.1_FGP001 60 DKITALQQIVSPF-----GKTDTASVLYEAINYIKWL 91
                       7888899999887.....8***************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.7754291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1057106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-857100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-46096No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MARGAAGGEV KTSISGGGGK EGKKKRSEEA AGSEGSTKKS KHEATSPTSS LKVPKVKLGD  60
KITALQQIVS PFGKTDTASV LYEAINYIKW LHEQVQLLSD PYMKSSSSKD YNAWGGLDRK  120
EKADAEVDLR SRGLCLVPVS CTPQVYRDNN GPDYWTPPYR SCLYR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538907.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361180.0CT836118.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122B23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658548.21e-101PREDICTED: uncharacterized protein LOC102714306
SwissprotQ9FYJ63e-48BH111_ARATH; Transcription factor bHLH111
TrEMBLA0A0D3GQV01e-109A0A0D3GQV0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AJH81e-107A0A0E0AJH8_9ORYZ; Uncharacterized protein
TrEMBLQ8L4Y91e-107Q8L4Y9_ORYSJ; BHLH transcription factor-like protein
STRINGOGLUM07G12960.11e-107(Oryza glumipatula)
STRINGOBART07G13960.11e-110(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP716979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-46bHLH family protein