PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538909.1_FGP014
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1067aa    MW: 115965 Da    PI: 6.4389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538909.1_FGP014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15761807455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  KN538909.1_FGP014 761 VHNLSEKRRRSRINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKQLQ 807
                        6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd015178.89E-951339No hitNo description
Gene3DG3DSA:3.30.540.102.5E-501248No hitNo description
SuperFamilySSF566551.47E-542341No hitNo description
TIGRFAMsTIGR013302.7E-1232339IPR0062393(2),5 -bisphosphate nucleotidase HAL2
PfamPF004591.4E-4839340IPR000760Inositol monophosphatase
PROSITE patternPS006290136149IPR020583Inositol monophosphatase, metal-binding site
PRINTSPR003777.1E-10136152IPR000760Inositol monophosphatase
Gene3DG3DSA:3.40.190.802.9E-24249339No hitNo description
PRINTSPR003777.1E-10308332IPR000760Inositol monophosphatase
PROSITE patternPS006300311325IPR020550Inositol monophosphatase, conserved site
SuperFamilySSF474598.11E-20754818IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-19755817IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.222757806IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.04E-17760811No hitNo description
PfamPF000102.6E-13761807IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-19763812IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0046854Biological Processphosphatidylinositol phosphorylation
GO:0008441Molecular Function3'(2'),5'-bisphosphate nucleotidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MEVAVRVVQA ACTLCQRVQS SLLLPASASA SGSVHSKLDR SPVTVADWGV QAIVSWLLSD  60
CFQDENISIV AEEDDETLSS SDGAALLESV VAAVNGCLIE APKYGLRSPE KELKAHDILQ  120
AIRRCSSIGG PKGRFWVLDP VDGTLGFVRG DQYAVALALI EDGEVVLGVL GCPNYPMKKE  180
WLNYHQRYYR LMSKVSPPTS GSWHKGCVMY AHRGCGQAWM QPLVHDFGKL DWRNSREVRV  240
STVSDPISAT FCEPVEKANT SHSFTAGLAH SVGLRKQPLR VYSMVKYAAI ARGDVEIFMK  300
FARAGYKEKI WDHAAGVVII REAGGVITDA GGRPLDFSRV GWTNVGHRMQ SVILQLELHG  360
AALAEQFFAA VFHAVLIHGG LEASPWRHQP GVCTGVEAVH QGDGPEAAVA VVFAFAARRH  420
LVAGEEVELI ADDGHGVEGS GVSNRYEGLA LLTTIVEGGG NCNPASDPLP NHSLLSTILI  480
NKILHLIHCI GSVAFGYPGS AEDHIPKAFV RLVRIPQYHF IYTTELKQLG NSGSDKHTAT  540
KETKAVVLFS GERVIEMLDP CDSICERNVE FHGELQELNT SLAGDPSDIT ADVGTPCKNG  600
GAARTMDQGI CSNQGGQSEL PPPTPTGDYN VLLQTTPSSV SAPPPSPIPV ESLPMLLLSW  660
EAMQDGNPAV ATVVPSSAQP VEAAASAAQL GTIVAMDNDG DDDLPMPGSE LAGVAQWRRC  720
RSWHGRCIGR DDQEEALGSS ESEQPTRPAR PRGKRSRAAE VHNLSEKRRR SRINEKMKAL  780
QSLVPNSSKT DKASMLDDAI EYLKQLQLQV QMLSMRNGLY VPPVNLSGAP EHLPIPQMSA  840
ALDQNSAKAS DPSVVLQPVN QTSGAHLPFE LANHHKPLFL PGVPNATALE PRFLVESSRS  900
NLQSLRFTEP AEMIYPDEMM LKHRLTSANE STIVPGTDEK SVRQNTYMMN ADRFDRYALS  960
KDQLQHIMPK NTESVLDMPH LHSKTTVQQP SSASAFHETA IVRLCKEQIS LIKTSKSVCD  1020
TVPLFSKILT KVLIVSDYKL TIQLPILDRL QTGDTEVRVE GRMKVNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5esy_A3e-751434520321SAL1 phosphatase
5esy_B3e-751434520321SAL1 phosphatase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538909.1_FGP014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0650570.0AK065057.1 Oryza sativa Japonica Group cDNA clone:J013001J07, full insert sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-32bHLH family protein