PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538914.1_FGP014

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 221aa MW: 25342.3 Da PI: 7.0169

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538914.1_FGP014	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.1	1.2e-21	61	121	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ KN538914.1_FGP014 61 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 121 89***************99************************************97 PP
2	Wus_type_Homeobox	104.8	5.8e-34	60	123	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq KN538914.1_FGP014 60 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 123 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-17	56	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.835	57	122	IPR001356	Homeobox domain
SMART	SM00389	1.9E-14	59	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-18	60	124	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-19	61	121	IPR001356	Homeobox domain
CDD	cd00086	2.60E-13	61	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MTDEQMEVLR KQISIYATIC EQLVEMHRAL TAQQDSIAGM RLGNLYCDPL MVPGGHKITA 60 RQRWTPTPMQ LQILENIFDQ GNGTPSKQKI KDITAELSQH GQISETNVYN WFQNRRARSK 120 RKQAALPNNN AESEAEADEE SPTDKKPKSD RPLHQNIAMR DHNSERISEM HHFDTEHEQI 180 RRMMYASNDS SSRSSGSLGQ MSFYDNVMSN PSTSYKHPCF I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538914.1_FGP014

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068585	0.0	AK068585.1 Oryza sativa Japonica Group cDNA clone:J013151P17, full insert sequence.
GenBank	AK102788	0.0	AK102788.1 Oryza sativa Japonica Group cDNA clone:J033107O14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626455.1	1e-158	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-159	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0E0C9H4	1e-167	A0A0E0C9H4_9ORYZ; Uncharacterized protein
STRING	OMERI01G31750.1	1e-157	(Oryza meridionalis)
STRING	OS01T0818400-01	1e-157	(Oryza sativa)
STRING	ONIVA01G40180.2	1e-157	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-69	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]