PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538915.1_FGP017

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 94aa MW: 10969.6 Da PI: 10.77

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538915.1_FGP017	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.6	4.4e-31	5	79	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl KN538915.1_FGP017 5 GEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 79 789**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.64	1	94	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-32	3	85	IPR003441	NAC domain
Pfam	PF02365	1.3E-13	9	79	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MAAIGEKEWF FYVPRDRKYR NGDRPNRVTA SGYWKATGAD RMIRAENNRP IGLKKTLVFY 60 SGKAPKGVRS SWIMNEYRLP PADTDRYHKV PIHP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-33	2	79	66	142	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-33	2	79	66	142	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-33	2	79	66	142	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-33	2	79	66	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	2	79	69	145	NAC domain-containing protein 19
3swm_B	1e-32	2	79	69	145	NAC domain-containing protein 19
3swm_C	1e-32	2	79	69	145	NAC domain-containing protein 19
3swm_D	1e-32	2	79	69	145	NAC domain-containing protein 19
3swp_A	1e-32	2	79	69	145	NAC domain-containing protein 19
3swp_B	1e-32	2	79	69	145	NAC domain-containing protein 19
3swp_C	1e-32	2	79	69	145	NAC domain-containing protein 19
3swp_D	1e-32	2	79	69	145	NAC domain-containing protein 19
4dul_A	9e-33	2	79	66	142	NAC domain-containing protein 19
4dul_B	9e-33	2	79	66	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538915.1_FGP017

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003346	1e-151	AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04.
GenBank	AP003431	1e-151	AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03.
GenBank	AP014957	1e-151	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-151	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695832.1	2e-59	PREDICTED: NAC transcription factor ONAC010
Swissprot	Q9ZVP8	2e-51	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0D9V8R6	2e-58	A0A0D9V8R6_9ORYZ; Uncharacterized protein
STRING	LPERR01G34330.2	3e-59	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-53	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]