PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538917.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 431aa    MW: 48595.6 Da    PI: 6.5059
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538917.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-22105191290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e e+ +  +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la
  KN538917.1_FGP001 105 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLT--DANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLA 191
                        7***************************************999877..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-20105191IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.446300338IPR007527Zinc finger, SWIM-type
PfamPF044344.5E-4311335IPR007527Zinc finger, SWIM-type
SMARTSM005750.0038313340IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVNTDGEGGS EGGVGDPMCV DDNAIVAVET GVGVDQGIGS QHDDAGGDRV MEGQGAVTNS  60
GDEMGMRAYG DEAETEEAAT VHGSKEGTEE LLRKVVYSEE AAYKLYCDYG HRMGFSIRKG  120
KQSYFTGTKR IRTKDYFCSK EGLKEGERLT DANFNDPHTR TNCKAMVRFR VNNHGEWKVI  180
RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVETSKQDS LPCYISMART LAIGNADLQN  240
LVRHLKSRAN EDAKVYTHRI YKLFETYFLD GCGATKFKEL HCEDNNRYQF EMTMQGRGSR  300
VCTVHFDMMT MQLNCSCSKF ETMGLLCPHA LKALSIKNVC SIPETYILKR WTKGAKKCVF  360
NPKQYESSYQ ECMDDEAAYC SHVMRYAYDL VTKSQGNEEL RKSLWETLES GEKELEKYLE  420
NVTQYALSYA T
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538917.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682910.0AK068291.1 Oryza sativa Japonica Group cDNA clone:J013149F05, full insert sequence.
GenBankAK1066380.0AK106638.1 Oryza sativa Japonica Group cDNA clone:002-113-E01, full insert sequence.
GenBankAP0040380.0AP004038.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_H01.
GenBankAP0047750.0AP004775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0451A10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626433.11e-169protein FAR1-RELATED SEQUENCE 5
TrEMBLB8AJD70.0B8AJD7_ORYSI; Uncharacterized protein
STRINGOMERI02G19070.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1-related sequence 5