PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538935.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 161aa    MW: 17778.2 Da    PI: 10.2558
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538935.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-1043831353
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
                       NR +A+rsR RK+++i eLe+ v +L++e + L  ++  l 
  KN538935.1_FGP003 43 NRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLD 83
                       *****************************988877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-53395IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.8E-104089No hitNo description
CDDcd147031.75E-194087No hitNo description
PfamPF001704.5E-84282IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-124389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAQLPPKIPV AAPGHHQHWA SAGGAGDAAW ADEFAEFAAI LANRQSAQRS RVRKLQYISE  60
LERSVTTLQN EVSVLSPRVA FLDQQRTILT VGNSHLKQRI AALAQDKIFK DAHQEALRKE  120
IERLRQVYQQ QNTKLSGGLA ADHAHVHGGP PPVRAEKELM S
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538935.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085530.0AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646335.13e-81PREDICTED: basic leucine zipper 6, partial
RefseqXP_015634100.14e-81basic leucine zipper 6 isoform X1
SwissprotQ5JMK63e-82BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLA0A0D3EU493e-90A0A0D3EU49_9ORYZ; Uncharacterized protein
STRINGOBART01G31310.15e-91(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.15e-50bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]