PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538938.1_FGP021
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 485aa    MW: 52218.5 Da    PI: 3.9975
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538938.1_FGP021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.4e-2591451128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG+rF+P+d+elv +yL ++++g++l+l+ v+ ++d ++++Pw+L + +  + +e +f ++++ k+a+gkr++r +   g+W+ +     
  KN538938.1_FGP021   9 LPPGLRFDPSDDELVGRYLLRRLQGQPLPLDGVVLDADPLSAQPWRLLADHGRGGDEAFFLAEAHAKNAKGKRQKRtVDGGGFWQGQRMcvd 100
                        79****************************999**************877777889********************555699**97655332 PP

                NAM  89 dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k++l+        + e  + k +L f+ ++ ++g ++ Wvmhey++
  KN538938.1_FGP021 101 GKKLLVPsddgggeELEIAWRKYVLSFF-AEGERG-SSGWVMHEYSV 145
                        334443356765433334899999****.444454.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-313164IPR003441NAC domain
PROSITE profilePS5100529.4819164IPR003441NAC domain
PfamPF023659.8E-1610145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAAAGADGLP PGLRFDPSDD ELVGRYLLRR LQGQPLPLDG VVLDADPLSA QPWRLLADHG  60
RGGDEAFFLA EAHAKNAKGK RQKRTVDGGG FWQGQRMCVD GKKLLVPSDD GGGEELEIAW  120
RKYVLSFFAE GERGSSGWVM HEYSVTAPAD LASSPLRLYR VRFSGYGKKR KREPECPGAG  180
GHDDGRAHGA PRRAEAETAL FEVEVGPPPP PLLVPPPAAG PADHGTDQSS SGVTDMVFRD  240
LPDLIADDGA ALLDQNQQDW SEVADQNSFC VMGEDSSLLL PDLPGMIDDN KHQQFVREFD  300
MPHLFVPQAE EAIAASADHG TDQGSSGVID MVFHDLPDII TLPAEQADAG GGAETALLDQ  360
NLQDCSEVAD QSSFGVMNDD SSLLLPDLPG MIDDNEHQQF VREFDMPHLF VSQAEEAIAG  420
GGGGAASAPS ADNQNCEFND GEDMALSDFE FPESIDEVLS YIDFSTSDTS CRDFTMDELF  480
DLPVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538938.1_FGP021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037540.0AP003754.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1341_A08.
GenBankAP0043820.0AP004382.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0418E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.10.0NAC transcription factor 32
TrEMBLA0A0E0E9I40.0A0A0E0E9I4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0Q6330.0A0A0E0Q633_ORYRU; Uncharacterized protein
TrEMBLQ8GRQ20.0Q8GRQ2_ORYSJ; Os07g0242800 protein
STRINGOMERI07G06980.10.0(Oryza meridionalis)
STRINGORUFI07G08610.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137