PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538942.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 127aa    MW: 13593.3 Da    PI: 9.6887
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538942.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.8e-212685357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  KN538942.1_FGP005 26 TRWCPTPEQLMMLEEMYRGgLRTPNAAQIQQITAHLstygRIEGKNVFYWFQNHKARERQ 85
                       8*****************99**************************************97 PP
2Wus_type_Homeobox122.22e-392487265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRW+PtpeQ+++Lee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk+
  KN538942.1_FGP005 24 STTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARERQKK 87
                       579***********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.8632186IPR001356Homeobox domain
SMARTSM003894.8E-52390IPR001356Homeobox domain
PfamPF000461.2E-182685IPR001356Homeobox domain
SuperFamilySSF466891.63E-122690IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-82685IPR009057Homeodomain-like
CDDcd000867.34E-42687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAPAVQQQQS GGGGGSTGAA AVGSTTRWCP TPEQLMMLEE MYRGGLRTPN AAQIQQITAH  60
LSTYGRIEGK NVFYWFQNHK ARERQKKRLT TLDVTTTTAA AAADADASHL AVLSLSPTAA  120
EFRVTPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538942.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0789771e-140AC078977.6 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0496H07, complete sequence.
GenBankAM4902441e-140AM490244.1 Oryza sativa mRNA for putative wuschel homeobox protein (wox3 gene).
GenBankAP0149611e-140AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-140CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639083.11e-40putative WUSCHEL-related homeobox 2
SwissprotA2XZR31e-41WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
SwissprotQ5W7C31e-41WOX2_ORYSJ; Putative WUSCHEL-related homeobox 2
TrEMBLA0A0E0KXU24e-40A0A0E0KXU2_ORYPU; Uncharacterized protein
TrEMBLJ3M3H06e-41J3M3H0_ORYBR; Uncharacterized protein
TrEMBLS5CI101e-40S5CI10_9ORYZ; WUS (Fragment)
TrEMBLS5CL961e-40S5CL96_ORYPU; WUS (Fragment)
STRINGOB05G11440.11e-41(Oryza brachyantha)
STRINGOPUNC05G01220.17e-41(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-37WOX family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]